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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JN102155.1 nt Boehmeria pannosa isolate P188 tRNA... 964 bp Boehmeria pannosa QL-PLN-00-007 577 bp View
JN102156.1 nt Cinnamomum insularimontanum isolate... 984 bp Cinnamomum insularimontanum QL-PLN-00-007 553 bp View
JN102157.1 nt Sapindus mukorossi isolate P193 tRN... 1059 bp Sapindus mukorossi QL-PLN-00-007 613 bp View
JN102158.1 nt Stephanandra incisa isolate P197 tR... 1062 bp Neillia incisa QL-PLN-00-007 595 bp View
JN102159.1 nt Ligustrum obtusifolium isolate P286... 979 bp Ligustrum obtusifolium QL-PLN-00-007 548 bp View
JN102160.1 nt Cardamine violifolia isolate P303 t... 1176 bp Cardamine circaeoides QL-PLN-00-007 587 bp View
JN102161.1 nt Chrysosplenium japonicum isolate P3... 809 bp Chrysosplenium japonicum QL-PLN-00-007 539 bp View
JN102162.1 nt Maianthemum japonicum isolate P372 ... 973 bp Maianthemum japonicum QL-PLN-00-007 535 bp View
JN102163.1 nt Staphylea bumalda isolate P383 tRNA... 1042 bp Staphylea bumalda QL-PLN-00-007 595 bp View
JN102165.1 nt Asparagus schoberioides isolate P38... 1041 bp Asparagus schoberioides QL-PLN-00-007 601 bp View
JN102166.1 nt Actinidia arguta isolate P388 tRNA-... 1032 bp Actinidia arguta QL-PLN-00-007 588 bp View
JN102167.1 nt Trachelospermum asiaticum isolate P... 1001 bp Trachelospermum asiaticum QL-PLN-00-007 560 bp View
JN102169.1 nt Rhamnella franguloides isolate P393... 1068 bp Rhamnella franguloides QL-PLN-00-007 595 bp View
JN102170.1 nt Cornus macrophylla isolate P394 tRN... 1022 bp Cornus macrophylla QL-PLN-00-007 595 bp View
JN102171.1 nt Maclura tricuspidata isolate P395 t... 1050 bp Maclura tricuspidata QL-PLN-00-007 575 bp View
JN102173.1 nt Actinidia rufa isolate P632 tRNA-Le... 1032 bp Actinidia rufa QL-PLN-00-007 588 bp View
JN102174.1 nt Sedum tosaense isolate P675 tRNA-Le... 937 bp Sedum tosaense QL-PLN-00-007 586 bp View
JN102176.1 nt Rubus coreanus isolate P677 tRNA-Le... 1053 bp Rubus coreanus QL-PLN-00-007 560 bp View
JN102177.1 nt Prunus persica isolate P678 tRNA-Le... 1058 bp Prunus persica QL-PLN-00-007 590 bp View
JN102178.1 nt Sophora flavescens isolate P679 tRN... 1095 bp Sophora flavescens QL-PLN-00-007 606 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.