Match details
Record ID: |
JN102173.1 |
Database: |
nt |
Go to original record |
Description: |
Actinidia rufa isolate P632 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Actinidia rufa |
Original size: |
1032 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
598 |
+ |
588 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctttttt tcgaaaacaa acaaagattc
151 agaaagcgaa aataaaacaa ggataggtgc agagactcaa tggaagctgt
201 tctaataaat ggggttaact gcgtcggtag aggaatcctt ccatcgaaac
251 ttcagaaagg atgaaagaga aacctatata catacgcata cgtactgaaa
301 tacttaatca aatgattaat gacgactaaa atgggtatcc gtattttttt
351 tatgaaaaat ggacgaattg ttgtgaatcg attccccatt gaataaagaa
401 ttgaatattt atttattgat caaatcattt actccatagt ctgatagatc
451 tttttaagaa ctgattaatc ggacaagaat aaagatagag tcccattcta
501 catgtcaata ccgacaacaa tgaaattgat agtaagagga aaatccgtcg
551 actttagaaa tcgtgagggt tcaagtccct ctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.65e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
588 |
569 |
2.65e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.