Match details
Record ID: |
JN102156.1 |
Database: |
nt |
Go to original record |
Description: |
Cinnamomum insularimontanum isolate P192 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Cinnamomum insularimontanum |
Original size: |
984 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
563 |
+ |
553 bp |
|
1 cgaaatcggt agacgctacg gacttggttg gattgagcct tggtatggaa
51 acctactaag tgataacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgttttcag aaaacaaggg ttcagaaagc
151 gagaaccaaa aaaaggatag gtgcagagac tcaaaggaag ctgttctaac
201 gaatggagtt gattaacatt ggtataggaa tccttctatc gaaattccag
251 aaaggatgac cctatcctat atacgtactg aaatatcaaa caattaatca
301 cgatccgatt ccgtattttt tttatatgaa aaatggaaga attcttgtga
351 atcgattcca aattgaagga agaatcgaat attcagtgat caaatcattc
401 actcctcgga tagatctttt gaagaactga ttaatcggac gagaataaag
451 atagagtcca ttctacatgt caataccgac aacaatgaaa tttatagtaa
501 ggggaaaatc cgtcgacttt agaaatcgtg agggttcaag tccctctatc
551 ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.49e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
553 |
534 |
2.49e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.