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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ860590.1 nt Potentilla pulchella tRNA-Leu (trnL... 594 bp Potentilla pulchella QL-PLN-00-007 594 bp View
DQ860591.1 nt Potentilla uniflora tRNA-Leu (trnL)... 603 bp Potentilla uniflora QL-PLN-00-007 603 bp View
DQ860593.1 nt Primula anvilensis tRNA-Leu (trnL) ... 614 bp Primula anvilensis QL-PLN-00-007 614 bp View
DQ860594.1 nt Primula nutans tRNA-Leu (trnL) gene... 592 bp Primula nutans QL-PLN-00-007 592 bp View
DQ860595.1 nt Puccinellia interior tRNA-Leu (trnL... 611 bp Puccinellia interior QL-PLN-00-007 611 bp View
DQ860596.1 nt Puccinellia wrightii tRNA-Leu (trnL... 613 bp Puccinellia wrightii QL-PLN-00-007 613 bp View
DQ860597.1 nt Pyrola grandiflora tRNA-Leu (trnL) ... 579 bp Pyrola grandiflora QL-PLN-00-007 579 bp View
DQ860598.1 nt Ranunculus nivalis tRNA-Leu (trnL) ... 584 bp Ranunculus nivalis QL-PLN-00-007 584 bp View
DQ860599.1 nt Ranunculus pygmaeus tRNA-Leu (trnL)... 577 bp Ranunculus pygmaeus QL-PLN-00-007 577 bp View
DQ860600.1 nt Ranunculus sulphureus tRNA-Leu (trn... 587 bp Ranunculus sulphureus QL-PLN-00-007 587 bp View
DQ860601.1 nt Rhododendron lapponicum tRNA-Leu (t... 585 bp Rhododendron lapponicum QL-PLN-00-007 585 bp View
DQ860602.1 nt Rhododendron tomentosum tRNA-Leu (t... 585 bp Rhododendron tomentosum QL-PLN-00-007 585 bp View
DQ860603.1 nt Rubus arcticus tRNA-Leu (trnL) gene... 567 bp Rubus arcticus QL-PLN-00-007 567 bp View
DQ860604.1 nt Rubus chamaemorus tRNA-Leu (trnL) g... 560 bp Rubus chamaemorus QL-PLN-00-007 560 bp View
DQ860605.1 nt Rumex acetosa tRNA-Leu (trnL) gene,... 540 bp Rumex acetosa QL-PLN-00-007 540 bp View
DQ860615.1 nt Saxifraga bracteata tRNA-Leu (trnL)... 610 bp Saxifraga bracteata QL-PLN-00-007 610 bp View
DQ860616.1 nt Saxifraga bronchialis tRNA-Leu (trn... 608 bp Saxifraga bronchialis QL-PLN-00-007 608 bp View
DQ860617.1 nt Saxifraga cernua tRNA-Leu (trnL) ge... 606 bp Saxifraga cernua QL-PLN-00-007 606 bp View
DQ860618.1 nt Saxifraga cespitosa tRNA-Leu (trnL)... 585 bp Saxifraga cespitosa QL-PLN-00-007 585 bp View
DQ860619.1 nt Saxifraga flexuosa tRNA-Leu (trnL) ... 597 bp Saxifraga flexuosa QL-PLN-00-007 597 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.