JRC GMO-Amplicons | EURL GMFF

Record ID:	DQ860601.1
Database:	nt	Go to original record
Description:	Rhododendron lapponicum tRNA-Leu (trnL) gene, intron.
Taxon:	Rhododendron lapponicum
Original size:	585 bp

Method:	QL-PLN-00-007	Go to GMOMETHODS record
		View in JRC GMO-Matrix
Description:	Qualitative PCR method for detection of chloroplast tRNA-Leu intron (ISO/FDIS 21569:2005).
Target:	chloroplast tRNA-Leu (trnL) intron

View other 20492 matches for this method

Predicted amplification details:

Mismatches	Gaps	From	To	Strand	Amplicon size
0	0	1	585	+	585 bp

Amplicon:

585 bp

1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aaaaaaaaaa
101   tgggcaatcc tgagccaaat ccttttttcg caaacaaaca aagattccga
151   aagctaaaaa aaaggatagg tgcagagact caatggaagc tgttctaaca
201   aatggagttg actgcgttgg tagaggaata gaaatccttc tatcaaaact
251   tacgaaaaaa taaaagataa ttctatatac atacgtatag gcactgaaat
301   actatatcaa atgattaata acgaccaaaa cctgtatccc tatttttttt
351   ataataaaaa tggaccaatt atcgtgaatt tatttcacat tgaataaaaa
401   attgcatatt ttttgatcaa atcatttact ccatcgtcta ctagatcttt
451   tgaagatctg atgaatcgga tgagaataaa gatagagtcc cattctacat
501   gtcaataccg acaacaatga aatttattgt aagaggaaaa tccgtcgact
551   ttagaaatcg tgagggttca agtccctcta tcccc

Primers alignment:

Primer/Probe	% Identity	Length	Mismatches	Gaps	From	To	Score
primerA	100.0	20 bp	0	0	1	20	2.63e-08
primerB	100.0	20 bp	0	0	585	566	2.63e-08

Match details