European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY319189.1 nt Anaxagorea javanica tRNA-Leu (trnL)... 970 bp Anaxagorea javanica QL-PLN-00-007 583 bp View
AY328142.1 nt Hibiscus rosa-sinensis specimen-vou... 1054 bp Hibiscus rosa-sinensis QL-PLN-00-007 599 bp View
AY328146.1 nt Pachira macrocarpa specimen-voucher... 1103 bp Pachira macrocarpa QL-PLN-00-007 620 bp View
AY328148.1 nt Chorisia speciosa specimen-voucher ... 1077 bp Ceiba speciosa QL-PLN-00-007 616 bp View
AY328156.1 nt Firmiana platanifolia specimen-vouc... 1076 bp Firmiana simplex QL-PLN-00-007 621 bp View
AY328157.1 nt Firmiana major specimen-voucher Gon... 1073 bp Firmiana major QL-PLN-00-007 618 bp View
AY328160.1 nt Hainania trichosperma specimen-vouc... 1061 bp Diplodiscus trichospermus QL-PLN-00-007 612 bp View
AY328161.1 nt Craigia yunnanensis specimen-vouche... 1102 bp Craigia yunnanensis QL-PLN-00-007 615 bp View
AY328162.1 nt Burretiodendron esquirolii specimen... 1063 bp Burretiodendron esquirolii QL-PLN-00-007 614 bp View
AY328163.1 nt Excentrodendron hsienmu specimen-vo... 1059 bp Excentrodendron hsienmu QL-PLN-00-007 610 bp View
AY328164.1 nt Pterospermum heterophyllum specimen... 1070 bp Pterospermum heterophyllum QL-PLN-00-007 613 bp View
AY328166.1 nt Muntingia calabura specimen-voucher... 997 bp Muntingia calabura QL-PLN-00-007 556 bp View
AY328167.1 nt Hopea hainanensis specimen-voucher ... 1062 bp Hopea hainanensis QL-PLN-00-007 604 bp View
AY328168.1 nt Vatica mangachapoi specimen-voucher... 1030 bp Vatica mangachapoi QL-PLN-00-007 580 bp View
AY437943.1 nt Luzula campestris tRNA-Leu (trnL) g... 966 bp Luzula campestris QL-PLN-00-007 618 bp View
AY507532.1 nt Haplomitrium mnioides tRNA-Leu gene... 717 bp Haplomitrium mnioides QL-PLN-00-007 576 bp View
AY522330.1 nt Oryza sativa Japonica Group cultiva... 134551 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
AY523507.1 nt Eleusine multiflora clone KH258 tRN... 1895 bp Eleusine multiflora QL-PLN-00-007 621 bp View
AY589122.1 nt Poa alpina voucher PI 372559 trnT-t... 1835 bp Poa alpina QL-PLN-00-007 563 bp View
AY589123.1 nt Poa annua trnT-trnL intergenic spac... 1820 bp Poa annua QL-PLN-00-007 616 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.