Match details
| Record ID: |
AY328148.1 |
| Database: |
nt |
Go to original record |
| Description: |
Chorisia speciosa specimen-voucher Jian 2001071003 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
| Taxon: |
Ceiba speciosa |
| Original size: |
1077 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
616 |
+ |
616 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ctattatttt acgaaaataa acaagggttc
151 agcaagcgag aataataaaa aaaaggatag gtgcagagac tcaatggaag
201 ctattctaac aaatggggtt gactgttggt aaaggaatcc ttatatcgaa
251 actccagaaa ggatgcaaga tatacctata taaaataaat aggtatacta
301 atgaaaaact atctcaaaaa agacgacccg aacctggatt ttctttttat
351 ttatatgcaa aatcaattta tatgaaaaat aaaaagaatt gttgtgaatc
401 gattccaagt tgaagaaaga atcgaataga atattcatta atcaaatcat
451 tcaccccata gtctgataaa tcttttgaaa aactgattaa tcggacgaga
501 ataaagatag agtcccgttc tacatgtcaa tatcaatacc gacaacaatg
551 aaatttatag taagaggaaa atccgtcgac tttaaaaatc gtgagggttc
601 aagtccctct atcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
616 |
597 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
