Match details
| Record ID: |
AY328168.1 |
| Database: |
nt |
Go to original record |
| Description: |
Vatica mangachapoi specimen-voucher Jian 2001112901 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
| Taxon: |
Vatica mangachapoi |
| Original size: |
1030 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
580 |
+ |
580 bp |
|
1 cgaaatcggt agacgctacg gacttaattg tattgagcct tagtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aaaaaaaaag
101 ggcaatcctg agccaaatcc tgtttaagtt caaaaagaaa taggataggt
151 gcagagactc aatggaagtt gttcgaacaa atggggttga ctgcttttgc
201 gttggtaaaa gaatacttct atcgaaactt cagcaaggat aaacatatag
251 aatacataat gaaaaaacta tttcaaaaaa gacgactggg acacctattc
301 ttttgatttc tattttttta taggttatag caaaaagaat tatatgaaaa
351 atcaaaagaa tccttgtgaa tcgatttcaa attgaagaaa gaatcaaata
401 gaatattcac taatcaaaca attcactcca tagtctgata aatcaataga
451 ttaattggac gagaataaag atagagtccc attctacatg tcaatatcaa
501 taccgacaac aatgaaattt atagtaagag gaaaatccgt cgactttaaa
551 aatcgtgagg gttcaagtcc ctctatcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.61e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
580 |
561 |
2.61e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
