Match details
| Record ID: |
AY328160.1 |
| Database: |
nt |
Go to original record |
| Description: |
Hainania trichosperma specimen-voucher Tang 99121404 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
| Taxon: |
Diplodiscus trichospermus |
| Original size: |
1061 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
612 |
+ |
612 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatagaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ctattatttt acgtaaaata aaataaacaa
151 aggttcagca agcgagaata agaaaaaaag gataggtgca gagactcaat
201 ggaagctatt ctaacaaatg gggttgactg ttggtaaagg aatccttata
251 tcgaaactcc agaaaggatg caagatatac ctatataaaa taaataggta
301 tactaatgaa aaactatttc aaaaaagacg acccgaaccc gtattttttt
351 tttttattta tatgcaaaat caatttatat gaaaaataaa aagaatcgat
401 ttcaagttga agaaagaatc gaatagaata ttcattaatc aaatcattca
451 ctccatcgtc tgataaatct tttgaaaaac tgattaatcg gacgagaata
501 aagatagagt cccgttctac atgtcaatat caataccgca acaatgaaat
551 ttatagtaag aggaaaatcc gtcgacttta aaaatcgyga gggttcaagt
601 ccctctatcc cc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.76e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
612 |
593 |
2.76e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
