Match details
| Record ID: |
AY328146.1 |
| Database: |
nt |
Go to original record |
| Description: |
Pachira macrocarpa specimen-voucher Jian 2001071002 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
| Taxon: |
Pachira macrocarpa |
| Original size: |
1103 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
620 |
+ |
620 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattggattg agccttggta
51 tggaaaccta ctaagtgata actttcaaat tcagagaaac cctggaatga
101 aaaatgggca atcctgagcc aaatcctatt attttacgaa aataaacaaa
151 ggttcagcaa gcgagaataa taaaaaaaag gataggtgca gagactcaat
201 ggaagctatt ctaacaaatg gggttgactg ttggtaaagg aatccttata
251 tcgaaactcc agaaaggatg caagatatac ctatataaaa taaataggta
301 tactaatgaa aaactatctc aaaaaagacg acccgaacct ggattttttt
351 ttatttatat gcaaaatcaa tttatatgaa aaataaaaag aattgttgtg
401 aatcgattcc aagttgaaga aagaatcgaa tagattattc attaatcaaa
451 tcattcactc catagtctga taaatctttt gaaaaactga ttaatcggac
501 gagaataaag atagagtccc gttctacatg tcaatatcaa taccgacaac
551 aatgaaattt atagtaagag gaaaatccgt cgacttttaa aatcgtgagg
601 gttcaagtcc ctctatcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.79e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
620 |
601 |
2.79e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
