Match details
| Record ID: |
AY328166.1 |
| Database: |
nt |
Go to original record |
| Description: |
Muntingia calabura specimen-voucher Jian 2001071010 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
| Taxon: |
Muntingia calabura |
| Original size: |
997 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
556 |
+ |
556 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tagkatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgttttacg agaataaacc gagactaaac
151 aaaggttcag aaagcgagaa taaaaaaaaa aggataggtg cagagactca
201 atggaagctg ttctaataaa tggcgttgac ggcctttgcg ttagtaaagg
251 aatccttcta tcgaaactac agagaaagaa agggtgaagg ataaacctat
301 atatacatac gtaatgaaaa acgatctcaa aaaaaaaaag aacgggtgtg
351 aatcgaatta aaaattaatg aatataatat tcattaatta aatgattcac
401 tccatagtct gataaatcgt tttaaaaatt gattaatcgg acgagaataa
451 agatagagtc ccattctaca tgtcaatagc gaccccaatg aaatttatag
501 taagaggaaa atccgtcgac tttaaaaatc gtgagggttc aagtccctct
551 atcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
556 |
537 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
