Match details
| Record ID: |
AY328164.1 |
| Database: |
nt |
Go to original record |
| Description: |
Pterospermum heterophyllum specimen-voucher Jian 2001071005 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
| Taxon: |
Pterospermum heterophyllum |
| Original size: |
1070 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
613 |
+ |
613 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc ctattatttt acgaaaataa acaaaggttc
151 agcaagcgag aataataaaa aagggatagg tgcagagact caatggaagc
201 tattctaaca aatggggttg actgttggta aaggaatcct tatatcgaaa
251 ctccagaaag gaaaggatgc aggatatacc tatataaaat aaataggtat
301 actaatgaag aactatttca aaaaagacga cctgaacccg tatttttttt
351 atttatatgc aaaataaatt taatttatat gaaaaataaa aagaatcgat
401 tccaaggtga agaaagaatc aaatagaata ttcattaatc aaatcattca
451 ctccatagtc tgataaatct tttgaaaaac tgattaatcg gacgagaata
501 aagatagagt cccgttctac atgtcaatat caataccgac aacaatgaaa
551 tttatagtaa gaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag
601 tccctctatc ccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.76e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
613 |
594 |
2.76e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
