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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ346946.1 nt Pausinystalia lane-poolei subsp. la... 1734 bp Corynanthe lane-poolei subsp. lane-poolei QL-PLN-00-007 571 bp View
AJ346953.1 nt Uncaria sp. Harder et al. 4242 chlo... 1724 bp Uncaria sp. Harder et al. 4242 QL-PLN-00-007 569 bp View
AJ409373.1 nt Acianthus exsertus chloroplast tRNA... 899 bp Acianthus exsertus QL-PLN-00-007 581 bp View
AJ409407.1 nt Elythranthera emarginata chloroplas... 860 bp Elythranthera emarginata QL-PLN-00-007 564 bp View
AJ409410.1 nt Eriochilus cucullatus chloroplast t... 847 bp Eriochilus cucullatus QL-PLN-00-007 547 bp View
AJ430874.1 nt Diospyros kaki chloroplast tRNA-Leu... 1362 bp Diospyros kaki QL-PLN-00-007 585 bp View
AJ430907.1 nt Alstonia scholaris chloroplast tRNA... 1339 bp Alstonia scholaris QL-PLN-00-007 554 bp View
AJ430912.1 nt Acanthus longifolius chloroplast tR... 1241 bp Acanthus longifolius QL-PLN-00-007 540 bp View
AJ430914.1 nt Jacaranda mimosifolia chloroplast t... 1303 bp Jacaranda mimosifolia QL-PLN-00-007 561 bp View
AJ430917.1 nt Sanango sp. Bremer 3352 chloroplast... 1281 bp Sanango sp. Bremer 3352 QL-PLN-00-007 561 bp View
AJ430919.1 nt Lamium album chloroplast tRNA-Leu g... 1197 bp Lamium album QL-PLN-00-007 536 bp View
AJ430921.1 nt Proboscidea fragrans chloroplast tR... 1289 bp Proboscidea fragrans QL-PLN-00-007 565 bp View
AJ430923.1 nt Cyclocheilon somaliense chloroplast... 1263 bp Cyclocheilon somaliense QL-PLN-00-007 551 bp View
AJ430924.1 nt Lindenbergia sp. Thulin 8079 chloro... 1279 bp Lindenbergia sp. Thulin 8079 QL-PLN-00-007 552 bp View
AJ430925.1 nt Orobanche hederae chloroplast tRNA-... 1025 bp Orobanche hederae QL-PLN-00-007 541 bp View
AJ430926.1 nt Paulownia tomentosa chloroplast tRN... 1302 bp Paulownia tomentosa QL-PLN-00-007 565 bp View
AJ430928.1 nt Phryma leptostachya chloroplast tRN... 1180 bp Phryma leptostachya QL-PLN-00-007 561 bp View
AJ430929.1 nt Antirrhinum majus chloroplast tRNA-... 1258 bp Antirrhinum majus QL-PLN-00-007 561 bp View
AJ430930.1 nt Globularia cordifolia chloroplast t... 1255 bp Globularia cordifolia QL-PLN-00-007 550 bp View
AJ430931.1 nt Plantago argentea chloroplast tRNA-... 1294 bp Plantago argentea QL-PLN-00-007 582 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.