European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GQ852530.1 nt Omiltemia filisepala trnT-trnL inte... 1678 bp Omiltemia filisepala QL-PLN-00-007 578 bp View
GQ984173.1 nt Phlox hoodii tRNA-Leu gene, partial... 621 bp Phlox hoodii QL-PLN-00-007 621 bp View
GQ984179.1 nt Arabis nuttallii tRNA-Leu gene, par... 579 bp Arabis nuttallii QL-PLN-00-007 579 bp View
GQ984181.1 nt Poa secunda tRNA-Leu gene, partial ... 611 bp Poa secunda QL-PLN-00-007 611 bp View
GQ984182.1 nt Eriogonum umbellatum tRNA-Leu gene,... 614 bp Eriogonum umbellatum QL-PLN-00-007 614 bp View
GU192006.1 nt Austrostipa elegantissima voucher P... 978 bp Austrostipa elegantissima QL-PLN-00-007 597 bp View
GU192016.1 nt Ortachne erectifolia voucher Wood 5... 976 bp Lorenzochloa erectifolia QL-PLN-00-007 597 bp View
GU192019.1 nt Anatherostipa orurensis voucher Pet... 978 bp Anatherostipa orurensis QL-PLN-00-007 598 bp View
GU323356.1 nt Solanum villosum tRNA-Leu (trnL) ge... 1057 bp Solanum villosum QL-PLN-00-007 563 bp View
GU323357.1 nt Solanum nigrum tRNA-Leu (trnL) gene... 1128 bp Solanum nigrum QL-PLN-00-007 571 bp View
GU323358.1 nt Solanum americanum tRNA-Leu (trnL) ... 1128 bp Solanum americanum QL-PLN-00-007 571 bp View
GU350687.1 nt Raphiocarpus sinicus tRNA-Leu (trnL... 940 bp Raphiocarpus sinicus QL-PLN-00-007 552 bp View
GU445335.1 nt Aristolochia californica voucher 19... 995 bp Aristolochia californica QL-PLN-00-007 565 bp View
GU445336.1 nt Aristolochia championii voucher HK ... 954 bp Aristolochia championii QL-PLN-00-007 529 bp View
GU445338.1 nt Aristolochia debilis voucher K. Yon... 1035 bp Aristolochia debilis QL-PLN-00-007 597 bp View
GU445339.1 nt Aristolochia debilis tRNA-Leu (trnL... 1037 bp Aristolochia debilis QL-PLN-00-007 597 bp View
GU445340.1 nt Aristolochia debilis tRNA-Leu (trnL... 1031 bp Aristolochia debilis QL-PLN-00-007 592 bp View
GU445341.1 nt Aristolochia kaempferi f. heterophy... 955 bp Aristolochia heterophylla QL-PLN-00-007 529 bp View
GU445342.1 nt Aristolochia kaempferi voucher H. M... 957 bp Aristolochia kaempferi QL-PLN-00-007 529 bp View
GU445343.1 nt Cardiocrinum cordatum voucher S. Ts... 853 bp Cardiocrinum cordatum QL-PLN-00-007 611 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.