Match details
Record ID: |
GU350687.1 |
Database: |
nt |
Go to original record |
Description: |
Raphiocarpus sinicus tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Raphiocarpus sinicus |
Original size: |
940 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
552 |
+ |
552 bp |
|
1 cgaaatcggt agacgctacg gacttaaatt agattgagcc ttggtatgga
51 aacctactaa gtgaagactt tccaaattca gagaaaccct ggaattaata
101 aaaatgggca atcctgagcc aaatcctgtt ttctcaaaac aagggttcag
151 agagcgaaaa agaggatagg tgcagagact caatggaagc tgttctaaca
201 aatggagttg accgcgtcgg tagaagaatt gaaacttcag aaaggatgaa
251 ggataaacgt atctattgaa tactattgat cattaataat ggcccgaatc
301 tgtatctggg tttttgtata tgaaaaatag aagaattggt gtgaattgat
351 ttcacattga taaaagaatc gaatattcat taatcaaatc attcactcca
401 cagtccgata gatctcttaa agaacttatt attcggacga gaatagagat
451 agagtcccgt tctacatgtc aataccggca acaatgaaac ttatagtaag
501 aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551 cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.48e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
552 |
533 |
2.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.