Match details
Record ID: |
GU445343.1 |
Database: |
nt |
Go to original record |
Description: |
Cardiocrinum cordatum voucher S. Tsugaru #19779 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Cardiocrinum cordatum |
Original size: |
853 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
611 |
+ |
611 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc tttattttga gaaaaagggt ttaatttata
151 gtttttataa tataaaacta caataaaaaa agataggtgc agagactcaa
201 tggaagctgt tctaacgaat gaagttgatt acgttgcgct ggtagccgga
251 atccttctat caaaattacg gagaggatgc ccgccctata tacgtatata
301 tacatactga catagtaaac gattgattaa tcgcggcccg aatccattat
351 ataatatata tatatatgaa aaatttaaga gttattgtaa atccattcca
401 tattccaatc aaagtttaag gaagaatcaa atattcagtg atcaaattat
451 tcattccaga gtctgtatag atctttttaa aaactgatta ttcggacgag
501 aataaagaga gagtcccatt ctacgtgtca ataccgacaa caatgaaatt
551 tatagtaaaa ggaaaatccg tcgactttat aagtcgtgag ggttcaagtc
601 cctctatccc c
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
611 |
592 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.