Match details
Record ID: |
GU323357.1 |
Database: |
nt |
Go to original record |
Description: |
Solanum nigrum tRNA-Leu (trnL) gene, trnL-trnF intergenic spacer, and tRNA-Phe (trnF) gene, complete sequence; chloroplast. |
Taxon: |
Solanum nigrum |
Original size: |
1128 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
581 |
+ |
571 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgatcacttt caaattcaga gaaaccctgg aattaacaaa
101 aatgggcaat cctgagccaa atcctgtttt ctgaaaacaa acaaaggttc
151 agaaaaaaag gataggtgca gagactcaat ggaagttatt ctaacaaatg
201 gagttaaatg cgttggtaga ggactcttta catcgaaact tcagaaagaa
251 aaagaatgaa gtgaaggata aacgtatata catacgtatt gaatactata
301 tcaaatgatt aatgacgacc cgaatccgta gtttttcgat aaaaaatcga
351 agaattggtg tgaatccatt ctacattgaa gaaagaatca aatattcatt
401 gatcaaatca ttcactccat agtctgatag atcttttgaa gaactgatta
451 atcggacgag aataaagata gagtcccgtt ctacatgtca ataccggcaa
501 caatgaaatt tatagtaaaa ggaaaatccg tcgactttaa aaatcgtgag
551 ggttcaagtc cctctatccc c
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
571 |
552 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.