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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ417957.1 nt Eschweilera atropetiolata voucher P... 1020 bp Eschweilera atropetiolata QL-PLN-00-007 594 bp View
DQ417969.1 nt Eschweilera mexicana voucher Wendt ... 1025 bp Eschweilera mexicana QL-PLN-00-007 598 bp View
DQ418002.1 nt Gustavia augusta voucher Prevost et... 1025 bp Gustavia augusta QL-PLN-00-007 598 bp View
DQ418003.1 nt Gustavia dubia voucher Marianne Ake... 1009 bp Gustavia dubia QL-PLN-00-007 582 bp View
DQ499400.1 nt Suaeda microsperma tRNA-Leu (trnL) ... 900 bp Suaeda microsperma QL-PLN-00-007 557 bp View
DQ501269.1 nt Momordica charantia tRNA-Leu (trnL)... 1032 bp Momordica charantia QL-PLN-00-007 598 bp View
DQ501271.1 nt Telfairia pedata tRNA-Leu (trnL) ge... 1026 bp Telfairia pedata QL-PLN-00-007 599 bp View
DQ662134.1 nt Aitchisonia rosea trnT-trnL interge... 1743 bp Aitchisonia rosea QL-PLN-00-007 595 bp View
DQ662137.1 nt Choulettia reboudiana trnT-trnL int... 1772 bp Choulettia reboudiana QL-PLN-00-007 600 bp View
DQ662140.1 nt Gaillonia crocyllis trnT-trnL inter... 1738 bp Plocama crocyllis QL-PLN-00-007 594 bp View
DQ662141.1 nt Gaillonia eriantha trnT-trnL interg... 1734 bp Plocama eriantha QL-PLN-00-007 594 bp View
DQ662142.1 nt Gaillonia olivieri trnT-trnL interg... 1765 bp Plocama olivieri QL-PLN-00-007 594 bp View
DQ662143.1 nt Gaillonia tinctoria trnT-trnL inter... 1777 bp Plocama tinctoria QL-PLN-00-007 599 bp View
DQ662162.1 nt Plocama pendula trnT-trnL intergeni... 1736 bp Plocama pendula QL-PLN-00-007 595 bp View
DQ662163.1 nt Pseudogaillonia hymenostephana trnT... 1738 bp Plocama hymenostephana QL-PLN-00-007 595 bp View
DQ662164.1 nt Pterogaillonia calycoptera trnT-trn... 1641 bp Pterogaillonia calycoptera QL-PLN-00-007 595 bp View
DQ662170.1 nt Spermacoce filituba trnT-trnL inter... 1830 bp Spermacoce filituba QL-PLN-00-007 588 bp View
DQ662220.1 nt Anthospermum welwitschii trnT-trnL ... 1695 bp Anthospermum welwitschii QL-PLN-00-007 591 bp View
DQ662221.1 nt Gaillonia yemenensis trnT-trnL inte... 1809 bp Plocama yemenensis QL-PLN-00-007 609 bp View
DQ673259.1 nt Jasminum subhumile psaA-psbB fragme... 36303 bp Chrysojasminum subhumile QL-PLN-00-007 564 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.