Match details
Record ID: |
DQ418002.1 |
Database: |
nt |
Go to original record |
Description: |
Gustavia augusta voucher Prevost et al. 4596 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Gustavia augusta |
Original size: |
1025 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
598 |
+ |
598 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt tcgaaaacaa acaaagattc
151 ataaagcgaa aataaaaaaa aaaggatagg tgcagagact caatggaagc
201 tgttctaaca aatggagttg actgcgttgg tagaggaatc tttccatcga
251 aatttcagaa agtatgaaag agaaacctat atacataggt agactactga
301 aataggcaga ctactgaaat actatatcaa atgattaatg acggccaaaa
351 tctgatccgt atttttttat atttaaaatg taagaattgt tgtgaatcga
401 ttccacataa agaattgaat atttattgat caaatcattt actccatggt
451 ctgatagatc ttttgaagag ctgattaatc ggacgagaat aaagatagag
501 tcccattcta catgtcaata ccgacaacaa tgaaatttat agtaagagga
551 aaatccgttg actttaaaaa tcgtgagggt tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.69e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
598 |
579 |
2.69e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.