Match details
Record ID: |
DQ662134.1 |
Database: |
nt |
Go to original record |
Description: |
Aitchisonia rosea trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Aitchisonia rosea |
Original size: |
1743 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
726 |
1320 |
+ |
595 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgggcct tggtatggaa
51 acccgctgag tgagaacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctatttt ccgaaaacaa aggtttagaa
151 agtgaaaaag gggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttggc tgcgttagtc gagaactctt tccatcaaaa attcacaaag
251 tataaggatt aaggatgaag tgaaggataa acggatatac tatccatacg
301 tagtgaatag tatattaaat gagtaatgac agccaaaatg aatctatatt
351 ctattttttc tataaaaaaa taaagaattg ttgttaatcg attccacgtt
401 taagaaagaa tcgaatattc atttattaaa tgattcactc catagtctgc
451 tagatctttt cacgaactga ttaatcggac gagaataaag atagagtccc
501 attctacatg tcaatgccgg caacaatgaa atttatagtt aagaggaaaa
551 tccgtcgact tttaaaatcg tgagggttca agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
595 |
576 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.