Match details
Record ID: |
DQ662141.1 |
Database: |
nt |
Go to original record |
Description: |
Gaillonia eriantha trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Plocama eriantha |
Original size: |
1734 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
718 |
1311 |
+ |
594 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgggcct tggtatggaa
51 acccgctgag tgagaacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctatttt ccgaaaacaa aggtttagaa
151 agtgaaaaag gggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttggc tgcgttagtc gagaactctt tccatcaaaa attcacaaag
251 tataaggatt aaggatgaag tgaaggataa acggatatac tatccatacg
301 tagtgaatag tatattaaat gagtaatgac agccaaaatg aatctatatt
351 ctattttttc tataaaaaat aaagaattgt tgttaatcga ttccacgttt
401 aagaaagaat cgaatattca tttattaaat gattcactcc atagtctgct
451 agatcttttc acgaactgat taatcggacg agaataaaga tagagtccca
501 ttctacatgt caatgccggc aacaatgaaa tttatagtta agaggaaaat
551 ccgtcgactt ttaaaatcgt gagggttcaa gtccctctat cccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
594 |
575 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.