Match details
Record ID: |
DQ662162.1 |
Database: |
nt |
Go to original record |
Description: |
Plocama pendula trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Plocama pendula |
Original size: |
1736 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
761 |
1355 |
+ |
595 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgggcct tggtatggaa
51 acccgctgag tgagaacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctatttt ccgaaaacaa aggtttagaa
151 agtgaaaaag gggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttggc tgcgttagtc gagaagtctt tccatcaaaa attcagaaag
251 tataaggatt aaggatgaag tgaaggataa acggatatac tatccatacg
301 tagtgaatag tatattaaat gagtaatgac agccaaaatg aatctatatt
351 ctattttttc taaaaaaaaa gaaagaattg ttcttaatcg attccacgtt
401 taagaaagaa gcgaatattc atttatcaaa tgattcactc catagtctgc
451 taaatctttt cacgaactga ttaatcggac gagaataaag atagagtccc
501 attctacatg tcaatgccgg caacaatgaa atttattgtt aagaggaaaa
551 tccgtcgact tttaaaatcg tgagggttca agtccctcta tcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
595 |
576 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.