Match details
Record ID: |
DQ662137.1 |
Database: |
nt |
Go to original record |
Description: |
Choulettia reboudiana trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Choulettia reboudiana |
Original size: |
1772 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
745 |
1344 |
+ |
600 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgggcct tggtatggaa
51 acccgctgag tgagaacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctatttt ccgaaaacaa aggtttagaa
151 agtgaaaaag gggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttggc tgcattagtc gagaagtctt tccatcaaaa attcagaaaa
251 tataaggatt aaggatgaag tgaaggataa acggatatac tatccatacg
301 tagtgaatag tatattatat taaatgagta atgacagcca aaatgaatct
351 atattctatt ttttctataa aaaactaaag aattgttgtt aatcgattcc
401 acgtttaaga aagaatcgaa tattcattta tcaaatgatt cactccatag
451 tctgctagat cttttcacga actgattaat cggacgagaa taaagataga
501 gtcccattct acatgtcaat gccggcaaca atgaaattta tagttaagag
551 gaaaatccgt cgacttttaa aatcgtgagg gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.70e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
600 |
581 |
2.70e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.