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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MG963245.1 nt Kopsia rosea chloroplast, partial g... 126663 bp Kopsia rosea QL-PLN-00-007 565 bp View
MG963246.1 nt Dyera costulata chloroplast, partia... 127999 bp Dyera costulata QL-PLN-00-007 562 bp View
MG963247.1 nt Alstonia scholaris chloroplast, par... 128824 bp Alstonia scholaris QL-PLN-00-007 554 bp View
MG963248.1 nt Aspidosperma cruentum chloroplast, ... 129770 bp Aspidosperma cruentum QL-PLN-00-007 561 bp View
MG963250.1 nt Diplorhynchus condylocarpon chlorop... 134414 bp Diplorhynchus condylocarpon QL-PLN-00-007 559 bp View
MG963252.1 nt Trachelospermum asiaticum chloropla... 129439 bp Trachelospermum asiaticum QL-PLN-00-007 560 bp View
MG963253.1 nt Amphineurion marginatum chloroplast... 129018 bp Amphineurion marginatum QL-PLN-00-007 566 bp View
MG963254.1 nt Thyrsanthella difformis chloroplast... 129260 bp Thyrsanthella difformis QL-PLN-00-007 567 bp View
MG963255.1 nt Laxoplumeria baehniana chloroplast,... 126926 bp Laxoplumeria baehniana QL-PLN-00-007 563 bp View
MG963256.1 nt Mandevilla x amabilis chloroplast, ... 128711 bp Mandevilla x amabilis QL-PLN-00-007 567 bp View
MG963259.1 nt Stapelia gigantea chloroplast, part... 130022 bp Stapelia gigantea QL-PLN-00-007 556 bp View
MG963261.1 nt Orthanthera albida chloroplast, par... 127587 bp Leptadenia albida QL-PLN-00-007 550 bp View
MG963264.1 nt Lacmellea panamensis chloroplast, p... 129768 bp Lacmellea panamensis QL-PLN-00-007 569 bp View
MG963265.1 nt Landolphia dawei chloroplast, parti... 129233 bp Landolphia dawei QL-PLN-00-007 563 bp View
MG963266.1 nt Lepiniopsis trilocularis chloroplas... 129707 bp Lepiniopsis trilocularis QL-PLN-00-007 574 bp View
MG963267.1 nt Craspidospermum verticillatum chlor... 128701 bp Craspidospermum verticillatum QL-PLN-00-007 576 bp View
MG963268.1 nt Melodinus cambodiensis chloroplast,... 129002 bp Melodinus cambodiensis QL-PLN-00-007 558 bp View
MG963269.1 nt Willughbeia edulis chloroplast, par... 129718 bp Willughbeia edulis QL-PLN-00-007 563 bp View
MG963270.1 nt Plectaneia stenophylla chloroplast,... 128789 bp Plectaneia stenophylla QL-PLN-00-007 564 bp View
MG963271.1 nt Skytanthus acutus chloroplast, part... 128408 bp Skytanthus acutus QL-PLN-00-007 564 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.