Match details
Record ID: |
MG963269.1 |
Database: |
nt |
Go to original record |
Description: |
Willughbeia edulis chloroplast, partial genome. |
Taxon: |
Willughbeia edulis |
Original size: |
129718 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48184 |
48746 |
+ |
563 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagctt tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aggggcaatc ctgagccaaa tcccgttttc cacaaacaaa ggttcagaaa
151 acgaaaaaag gataggtgca gagactcaac ggaagctgtt ctaacaaatg
201 gagttggccg cgttggtaga gaaatctttc tatcgaaaat tcagaaagga
251 tgaaggataa acgtatatac atacgtattg aatactatat caaacgatta
301 atgccgaccc gaatgaatcc gtattttttc tataaaaaat ggaagaattg
351 gtctgattcg attccacatt gaagaaagaa tcgaatattc attgatcaaa
401 tgattcactc catagtctgt agatcttttc aagaactgat taatcggacg
451 agaataaaga tagagtcccg ttctacatgt caatgctggc aacaatgaaa
501 tttatagtaa gaggaaaatc cgtcgactta aaaaatcgtg agggttcaag
551 tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
563 |
544 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.