Match details
Record ID: |
MG963247.1 |
Database: |
nt |
Go to original record |
Description: |
Alstonia scholaris chloroplast, partial genome. |
Taxon: |
Alstonia scholaris |
Original size: |
128824 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47715 |
48268 |
+ |
554 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aagggcaatc ctgagccaaa tcctgttttc cacaaacaaa ggttcagaaa
151 acgaaaaaag gataggtgca gagactcaac ggaagctgtt cttacaaatg
201 gagttggccg cgttggtaga gaaatctttc catcgaaaat tcagaagata
251 aacgtatata catacgtatt gaatactata tcaaatgatt aatgccgacc
301 cgaatgaatc tgtatttttt ctatgaaaaa tggaggaatt ggtgtgattc
351 gattccacat tgaagaaaga atcgaatatt cattgatcaa atgattcact
401 ccatagtctg aagatctttt caagaactga ttaatcggac gagaataaag
451 atagagtccc gttctacatg tcaatgccgg caacaatgaa atttatagta
501 agaggaaaat ccgtcgactt taaaaatcgt gagggttcaa gtccctctat
551 cccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.49e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
554 |
535 |
2.49e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.