Match details
Record ID: |
MG963270.1 |
Database: |
nt |
Go to original record |
Description: |
Plectaneia stenophylla chloroplast, partial genome. |
Taxon: |
Plectaneia stenophylla |
Original size: |
128789 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48074 |
48637 |
+ |
564 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aagggcaatc ctgagccaaa tccggttttc cacaaacaaa gattcagaaa
151 acgaaaacaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttgtcc gcgttggtag agaaatcttt ccatcgaaaa ttcagaaagg
251 atgaaggata aacgtatata catacgtatt gaatactata tcaaaggatt
301 aatgccgacc cgaatgaatc tgtatttttt ctataaaaaa tggaagaatt
351 ggtatgattc gattccacat ggaagaaaga atcgaatatt cattgatcaa
401 atgattcact ccatagtctg tagatctttt caagaactga ttaatcggac
451 gagaataaag atagagtccc gttctacatg tcaatgctgg caacaatgaa
501 atttatagta agaggaaaat ccgtcgactt aaaaaatcgt gagggttcaa
551 gtccctctat cccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
564 |
545 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.