Match details
Record ID: |
MG963246.1 |
Database: |
nt |
Go to original record |
Description: |
Dyera costulata chloroplast, partial genome. |
Taxon: |
Dyera costulata |
Original size: |
127999 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48080 |
48641 |
+ |
562 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aagggcaatc ctgagccaaa tcctgttttc cacaaacaaa ggttcagaaa
151 acgaaaaaag gataggtgca gagactcaac ggaagctgtt ctaacgttct
201 aacaaatgga gttggccgcg ttggtagaga aatctttcca tcgaaaattc
251 agaagataaa cgtatataca tacgtatcga atactatatc aaatgattaa
301 tgccgacccg aatgaatctg tattttttct atgaaaaatg taggaattga
351 tgtgattcga ttccacattg aagaaagaat cgaatattca ttgatcaaat
401 gattcactcc acggtctgta gatcttttca agaactgatt aatcggacga
451 gaataaagat agagtcccgt tctacatgtc aatgccggca acaatgaaat
501 ttatagtaag aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt
551 ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
562 |
543 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.