Match details
Record ID: |
MG963255.1 |
Database: |
nt |
Go to original record |
Description: |
Laxoplumeria baehniana chloroplast, partial genome. |
Taxon: |
Laxoplumeria baehniana |
Original size: |
126926 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48117 |
48679 |
+ |
563 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aagggcaatc ctgagccaaa tccagttttc cacaaacaaa ggttcagaaa
151 acgaaaaaag gataggtgca gagactcaat ggaagctgtt ctaacaaatg
201 gagttggctg cgttggtaga gaaatctttc catcgaaaat tcagaaagga
251 tgaaggataa acgtatatac atacgtattg aatactatat caaatgatta
301 atgccgaccc gaatgaatct gtattttttc tataaaaaat gtaagaattg
351 gtatgattcg attccacatt gaagaaagaa tcgaatattc attgatcaaa
401 tgattcactc catagtctgt agatcttttc aagaactgat taatcggacg
451 agaataaaga tagagtcccg ttctacatgt caatgctggc aacaatgaaa
501 tttatagtaa gaggaaaatc cgtcgactta aaaaatcgtg agggttcaag
551 tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
563 |
544 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.