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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ860516.1 nt Antennaria friesiana tRNA-Leu (trnL... 526 bp Antennaria friesiana QL-PLN-00-007 526 bp View
DQ860518.1 nt Arctagrostis latifolia tRNA-Leu (tr... 620 bp Arctagrostis latifolia QL-PLN-00-007 620 bp View
DQ860519.1 nt Arctophila fulva tRNA-Leu (trnL) ge... 613 bp Arctophila fulva QL-PLN-00-007 613 bp View
DQ860520.1 nt Armeria scabra tRNA-Leu (trnL) gene... 574 bp Armeria scabra QL-PLN-00-007 574 bp View
DQ860525.1 nt Astragalus polaris tRNA-Leu (trnL) ... 611 bp Astragalus polaris QL-PLN-00-007 611 bp View
DQ860526.1 nt Astragalus umbellatus tRNA-Leu (trn... 615 bp Astragalus umbellatus QL-PLN-00-007 615 bp View
DQ860527.1 nt Beckwithia chamissonis tRNA-Leu (tr... 580 bp Ranunculus glacialis subsp. camissonis QL-PLN-00-007 580 bp View
DQ860530.1 nt Bistorta vivipara tRNA-Leu (trnL) g... 603 bp Bistorta vivipara QL-PLN-00-007 603 bp View
DQ860531.1 nt Boykinia richardsonii tRNA-Leu (trn... 579 bp Boykinia richardsonii QL-PLN-00-007 579 bp View
DQ860532.1 nt Bupleurum americanum tRNA-Leu (trnL... 583 bp Bupleurum americanum QL-PLN-00-007 583 bp View
DQ860541.1 nt Castilleja caudata tRNA-Leu (trnL) ... 563 bp Castilleja caudata QL-PLN-00-007 563 bp View
DQ860542.1 nt Castilleja hyperborea tRNA-Leu (trn... 556 bp Castilleja hyperborea QL-PLN-00-007 556 bp View
DQ860543.1 nt Cerastium beeringianum tRNA-Leu (tr... 590 bp Cerastium beeringianum QL-PLN-00-007 590 bp View
DQ860544.1 nt Chamerion angustifolium tRNA-Leu (t... 605 bp Chamaenerion angustifolium QL-PLN-00-007 605 bp View
DQ860545.1 nt Chamerion latifolium tRNA-Leu (trnL... 606 bp Chamaenerion latifolium QL-PLN-00-007 606 bp View
DQ860546.1 nt Ranunculus lapponicus tRNA-Leu (trn... 569 bp Ranunculus lapponicus QL-PLN-00-007 569 bp View
DQ860547.1 nt Deschampsia brevifolia tRNA-Leu (tr... 613 bp Deschampsia brevifolia QL-PLN-00-007 613 bp View
DQ860548.1 nt Deschampsia sukatschewii tRNA-Leu (... 613 bp Deschampsia sukatschewii QL-PLN-00-007 613 bp View
DQ860549.1 nt Diapensia lapponica tRNA-Leu (trnL)... 588 bp Diapensia lapponica QL-PLN-00-007 588 bp View
DQ860554.1 nt Dryas integrifolia tRNA-Leu (trnL) ... 591 bp Dryas integrifolia QL-PLN-00-007 591 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.