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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF387437.1 nt Amorphophallus beccarii tRNA-Leu (t... 556 bp Amorphophallus beccarii QL-PLN-00-007 554 bp View
AF387443.1 nt Amorphophallus decus-silvae tRNA-Le... 584 bp Amorphophallus decus-silvae QL-PLN-00-007 582 bp View
AF387444.1 nt Amorphophallus dracontioides tRNA-L... 562 bp Amorphophallus dracontioides QL-PLN-00-007 560 bp View
AF387445.1 nt Amorphophallus eburneus tRNA-Leu (t... 578 bp Amorphophallus eburneus QL-PLN-00-007 576 bp View
AF387447.1 nt Amorphophallus galbra tRNA-Leu (trn... 563 bp Amorphophallus galbra QL-PLN-00-007 561 bp View
AF387448.1 nt Amorphophallus henryi tRNA-Leu (trn... 572 bp Amorphophallus henryi QL-PLN-00-007 570 bp View
AF387449.1 nt Amorphophallus hirsutus tRNA-Leu (t... 583 bp Amorphophallus hirsutus QL-PLN-00-007 581 bp View
AF387450.1 nt Amorphophallus hirtus tRNA-Leu (trn... 563 bp Amorphophallus hirtus QL-PLN-00-007 561 bp View
AF387454.1 nt Amorphophallus lambii tRNA-Leu (trn... 569 bp Amorphophallus lambii QL-PLN-00-007 567 bp View
AF387458.1 nt Amorphophallus angolensis tRNA-Leu ... 593 bp Amorphophallus angolensis QL-PLN-00-007 591 bp View
AF387461.1 nt Amorphophallus napiger tRNA-Leu (tr... 562 bp Amorphophallus napiger QL-PLN-00-007 560 bp View
AF387464.1 nt Amorphophallus paeoniifolius tRNA-L... 563 bp Amorphophallus paeoniifolius QL-PLN-00-007 561 bp View
AF387465.1 nt Amorphophallus palawanensis tRNA-Le... 595 bp Amorphophallus palawanensis QL-PLN-00-007 593 bp View
AF387466.1 nt Amorphophallus pingbianensis tRNA-L... 577 bp Amorphophallus pingbianensis QL-PLN-00-007 575 bp View
AF387468.1 nt Amorphophallus pygmaeus tRNA-Leu (t... 599 bp Amorphophallus pygmaeus QL-PLN-00-007 597 bp View
AF387470.1 nt Amorphophallus sagittarius tRNA-Leu... 560 bp Amorphophallus sagittarius QL-PLN-00-007 559 bp View
AF387472.1 nt Amorphophallus symonianus tRNA-Leu ... 563 bp Amorphophallus symonianus QL-PLN-00-007 561 bp View
AF387473.1 nt Amorphophallus taurostigma tRNA-Leu... 567 bp Amorphophallus taurostigma QL-PLN-00-007 565 bp View
AF387474.1 nt Amorphophallus titanum tRNA-Leu (tr... 583 bp Amorphophallus titanum QL-PLN-00-007 581 bp View
AF387476.1 nt Amorphophallus yunnanensis tRNA-Leu... 567 bp Amorphophallus yunnanensis QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.