Match details
Record ID: |
AF387472.1 |
Database: |
nt |
Go to original record |
Description: |
Amorphophallus symonianus tRNA-Leu (trnL) gene, partial sequence; chloroplast gene for chloroplast product. |
Taxon: |
Amorphophallus symonianus |
Original size: |
563 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
562 |
+ |
561 bp |
|
1 cgaaatcggt agacgctacg gacttgattg cattgagcct tggtatggaa
51 acctactaag tggtaacttc caaactcaga gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc cttgttttga gaaaaaagga taggtgcaga
151 gactcaatgg aagctattct aacaaatgga gttgattgca ttgcgttggt
201 agctggaatt cttctttcta tctaaattac agaaaggata accctatata
251 cctaatacgc acgtatatat actgacatat caaacgatta atcacgaccc
301 aaatccataa taattattta tataattata ataaattcaa aattttatga
351 aaaattaaag agttattgcg aatccattct aaattgaagt aagagtcgaa
401 tattcagtga tcaaatcatt tgaaaaaaaa aaaatgatta atcggacgag
451 aataaagaga gagtcccatt ctacatgtca ataccgacaa caatgaaatt
501 tatagtaaga ggaaaatccg tcgactttag aaatcgtgag ggttcaagtc
551 cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
561 |
542 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.