Match details
Record ID: |
AF387473.1 |
Database: |
nt |
Go to original record |
Description: |
Amorphophallus taurostigma tRNA-Leu (trnL) gene, partial sequence; chloroplast gene for chloroplast product. |
Taxon: |
Amorphophallus taurostigma |
Original size: |
567 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
566 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttgattg cattgagcct tggtatggaa
51 acctactaag tggtaacttc caaactcaga gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc cttgttttga gaaaaaagga taggtgcaga
151 gactcaacgg aagctgttct aacaaatgga gttgattgca ttgcgttggt
201 agctggaatt cttctttcta tctaaattac agaaaagata accctatata
251 cctaatacgc acgtatatat actgaactga catatcaaac gattaatcac
301 gacccaaatc cataataatt atttatataa ttataataaa ttcaaaattt
351 tatgaaaaat taaagagtta ttgcgaatcc attctaaatt gaagtaagag
401 tcgaatattc agtgatcaaa tcatttgaaa aaaaaaaatg attaatcgga
451 cgagaataaa gagagagtcc cattctacat gtcaataccg acaacaatga
501 aatttatagt aagaggaaaa tccgtcgact ttagaaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.