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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MZ424313.1 nt Callicarpa rubella chloroplast, com... 154140 bp Callicarpa rubella QL-PLN-00-007 562 bp View
MZ427936.1 nt Trichosanthes homophylla isolate PE... 157332 bp Trichosanthes homophylla QL-PLN-00-007 584 bp View
MZ427941.1 nt Trichosanthes sp. HLQ090003 01 chlo... 157200 bp Trichosanthes sp. HLQ090003 01 QL-PLN-00-007 593 bp View
MZ427942.1 nt Trichosanthes sp. HLQ090035 01 chlo... 156589 bp Trichosanthes sp. HLQ090035 01 QL-PLN-00-007 588 bp View
MZ427943.1 nt Trichosanthes sp. HLQ090031 01 chlo... 156871 bp Trichosanthes sp. HLQ090031 01 QL-PLN-00-007 585 bp View
MZ427944.1 nt Zehneria sp. PEBO4401 chloroplast, ... 157365 bp Zehneria sp. PEBO4401 QL-PLN-00-007 597 bp View
MZ427946.1 nt Trichosanthes sp. PEBO4545 chloropl... 156405 bp Trichosanthes sp. PEBO4545 QL-PLN-00-007 586 bp View
MZ427947.1 nt Trichosanthes truncata isolate 2100... 157237 bp Trichosanthes truncata QL-PLN-00-007 586 bp View
MZ427949.1 nt Trichosanthes tricuspidata isolate ... 157452 bp Trichosanthes tricuspidata QL-PLN-00-007 589 bp View
MZ427950.1 nt Trichosanthes kirilowii isolate 160... 156980 bp Trichosanthes kirilowii QL-PLN-00-007 587 bp View
MZ427957.1 nt Trichosanthes dunniana isolate HLQW... 4085 bp Trichosanthes dunniana QL-PLN-00-007 583 bp View
MZ427974.1 nt Trichosanthes kerrii isolate PT6926... 18364 bp Trichosanthes kerrii QL-PLN-00-007 590 bp View
MZ428089.1 nt Trichosanthes parviflora isolate PE... 2877 bp Trichosanthes parviflora QL-PLN-00-007 583 bp View
MZ428135.1 nt Trichosanthes pilosa isolate HLQW09... 2183 bp Trichosanthes pilosa QL-PLN-00-007 587 bp View
MZ428161.1 nt Trichosanthes sericeifolia isolate ... 1701 bp Trichosanthes sericeifolia QL-PLN-00-007 586 bp View
MZ428185.1 nt Trichosanthes villosa isolate PEBO4... 19883 bp Trichosanthes villosa QL-PLN-00-007 593 bp View
MZ450974.1 nt Hyoscyamus muticus chloroplast, com... 156271 bp Hyoscyamus muticus QL-PLN-00-007 571 bp View
MZ458126.1 nt Casasia calophylla voucher Rova et ... 1689 bp Casasia calophylla QL-PLN-00-007 568 bp View
MZ458127.1 nt Casasia jacquinioides voucher Rova ... 1480 bp Casasia jacquinioides QL-PLN-00-007 569 bp View
MZ458128.1 nt Catunaregam nilotica voucher Razafi... 1564 bp Catunaregam nilotica QL-PLN-00-007 572 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.