Match details
Record ID: |
MZ427944.1 |
Database: |
nt |
Go to original record |
Description: |
Zehneria sp. PEBO4401 chloroplast, complete genome. |
Taxon: |
Zehneria sp. PEBO4401 |
Original size: |
157365 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49937 |
50533 |
+ |
597 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctttttccga aaacaaaaaa aaagggggta
151 ggtgcagaga ctcaatggaa gctgttctaa caaatggagt tgactacgtt
201 gcgttagtaa aggaatgaat ctttccatcg aaactccaga aaagatgaaa
251 gataaacgta ttacgtactg aaatactata ttgattaatg acaactcgaa
301 tctccatttt tttatattta tatataaaat atcaaaatag atatataaaa
351 atgacccaat tgttatgaat cgattccaat atctccaagt tgaaaaaaga
401 atcgaatatt cattgatcaa atcatttact ccatcataca tagtctgata
451 gatcttttga agaactgatt aatcagatgc gactagaata aagatagagt
501 cccattctac atgtcaatac cgacaaaaat gaaatttata gtaagaggaa
551 aatccgtcga ctttaaaaat cgtgagggtt caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.69e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
597 |
578 |
2.69e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.