Match details
Record ID: |
MZ427949.1 |
Database: |
nt |
Go to original record |
Description: |
Trichosanthes tricuspidata isolate PEBO4048 chloroplast, complete genome. |
Taxon: |
Trichosanthes tricuspidata |
Original size: |
157452 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49739 |
50327 |
+ |
589 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctttttccga aaacaaaaaa aaaaagggta
151 ggtgcagaga ctcaatggaa gctgttctaa caaatggagt tgactacgtt
201 gcgttagtaa aggaatgaat ccttctatcg aaactccaga aaagatgaaa
251 gataaacgta ttacgtactg aaatactatt tgattaatga caacccgaat
301 ctctattttt ttttatataa atataaaaaa tgatatataa aaatgaacga
351 attgttctga atcgattcca atatctccaa gttgaaaaaa gaatcgaata
401 ttcattgatc aaatcattta ctccatcata catagtctga tagatctttt
451 gaagaactga ttaatcagat gcgaatagaa taaagataga gtcccattct
501 acatgtcaat accgacaaaa atgaaattta tagtaagagg aaaatccgtc
551 gactttaaaa atcgtgaggg ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.65e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
589 |
570 |
2.65e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.