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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JN030969.1 nt Poa annua isolate a trnT-trnL inter... 1801 bp Poa annua QL-PLN-00-007 616 bp View
JN030970.1 nt Poa infirma isolate I1 trnT-trnL in... 1864 bp Poa infirma QL-PLN-00-007 616 bp View
JN030971.1 nt Poa infirma isolate I2 trnT-trnL in... 1864 bp Poa infirma QL-PLN-00-007 616 bp View
JN030974.1 nt Poa supina isolate S2 trnT-trnL int... 1820 bp Poa supina QL-PLN-00-007 616 bp View
JN102137.1 nt Hepatica insularis isolate P72 tRNA... 837 bp Hepatica nobilis var. japonica QL-PLN-00-007 580 bp View
JN102138.1 nt Elaeagnus umbellata isolate P141 tR... 972 bp Elaeagnus umbellata QL-PLN-00-007 594 bp View
JN102139.1 nt Acer pseudosieboldianum isolate P14... 1017 bp Acer pseudosieboldianum QL-PLN-00-007 589 bp View
JN102140.1 nt Veratrum patulum isolate P149 tRNA-... 1077 bp Veratrum patulum QL-PLN-00-007 615 bp View
JN102141.1 nt Alangium platanifolium var. macroph... 987 bp Alangium platanifolium var. macrophyllum QL-PLN-00-007 558 bp View
JN102142.1 nt Viburnum erosum isolate P152 tRNA-L... 1037 bp Viburnum erosum QL-PLN-00-007 576 bp View
JN102143.1 nt Cornus kousa isolate P154 tRNA-Leu ... 1016 bp Cornus kousa QL-PLN-00-007 588 bp View
JN102144.1 nt Clerodendrum trichotomum isolate P1... 938 bp Clerodendrum trichotomum QL-PLN-00-007 556 bp View
JN102145.1 nt Styrax japonicus isolate P159 tRNA-... 1022 bp Styrax japonicus QL-PLN-00-007 579 bp View
JN102147.1 nt Acer mono isolate P162 tRNA-Leu (tr... 1005 bp Acer pictum subsp. mono QL-PLN-00-007 589 bp View
JN102148.1 nt Akebia quinata isolate P163 tRNA-Le... 1034 bp Akebia quinata QL-PLN-00-007 579 bp View
JN102150.1 nt Euscaphis japonica isolate P165 tRN... 1045 bp Euscaphis japonica QL-PLN-00-007 593 bp View
JN102151.1 nt Viburnum dilatatum isolate P171 tRN... 1037 bp Viburnum dilatatum QL-PLN-00-007 576 bp View
JN102152.1 nt Actinidia polygama isolate P181 tRN... 1019 bp Actinidia polygama QL-PLN-00-007 581 bp View
JN102153.1 nt Swida controversa isolate P182 tRNA... 1023 bp Cornus controversa QL-PLN-00-007 595 bp View
JN102154.1 nt Aphananthe aspera isolate P187 tRNA... 979 bp Aphananthe aspera QL-PLN-00-007 600 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.