Match details
Record ID: |
JN102150.1 |
Database: |
nt |
Go to original record |
Description: |
Euscaphis japonica isolate P165 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Euscaphis japonica |
Original size: |
1045 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
603 |
+ |
593 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ccgaaaacaa acaaaggttc
151 agaaagcgaa aataaaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacaaatg gagttgactg tgttgcgttg gtaaaggaat ccttccatca
251 aaacttcaga aaggatgaag gataacccta tatacataca tagacgtact
301 gaaatactat atcaaatgat taatgacgac ccgaatctgt atctgtattt
351 tttattttat atgaaaaata gaagaattgt tgtgaagcaa ttccatattg
401 aagaaagaat cgaatattca ttgatcaaat cattcactcc atagtctgat
451 agatcttttg aataaatgat taatcggacg agaataaaga tagagtccca
501 ttctacatgt caataccggc aacaatgaaa tttatagtaa gaggaaaatc
551 cgtcgacttt agaaatcgtg agggttcaag tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.67e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
593 |
574 |
2.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.