Match details
Record ID: |
JN102139.1 |
Database: |
nt |
Go to original record |
Description: |
Acer pseudosieboldianum isolate P147 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Acer pseudosieboldianum |
Original size: |
1017 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
599 |
+ |
589 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaacccggg aatcaaaaat
101 gggcaatcct gagccaaatc ctgttttacg agaataaaac aaagcaaaca
151 agggttcaga aagcgaaaaa agggataggt gcagagactc aacggaagct
201 gttctaacaa atggagttga ctgccttttt ttgggaaaga aaggcaaatt
251 aatcgaatat cgaaactgca taaaggataa gtctataata cactatggat
301 acaaaatgaa aaattatctc aaaaatgaca acctgaagct gtatttatat
351 taatgaaaaa gaaaacaaaa gaattgggat tccaagttga agaatcgaat
401 attcattgat ccaatcattc actccatagt ctggtagatt gtttcttttg
451 aagaactgat tactcagacg agaataaaga tagagtccca ttctacatgt
501 caatataaat accggcaaca atgaaattta tagtaagagg aaaatccgtc
551 gactttagaa atcgtgaggg ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.65e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
589 |
570 |
2.65e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.