Match details
Record ID: |
JN102142.1 |
Database: |
nt |
Go to original record |
Description: |
Viburnum erosum isolate P152 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Viburnum erosum |
Original size: |
1037 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
586 |
+ |
576 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aattaataaa
101 atgggcaatc ctgagccaaa tcctgttttc cgaaaacaaa caaagaagcg
151 aaaaaaaaag gataggtgca gagactcaat ggaagctgtt ctaacaaatg
201 gagttgactg tgttgcgttg gtagaggaat ccttccatcg aaacttcaga
251 aaggatgaag gataacccta atatacatat acatactgaa atactatatc
301 aaatgatcaa tgacgactcg aatctgtatc tgtcattttt ttctataaaa
351 atagaagaat tgttgtgaag caattccata ttgaagaaag aatctaatat
401 tcattgatca aatcattcac tccatagtct gatagatctt ttgaagaaat
451 gattaatcgg acgagaataa agatagagtc ccattctaca tgtcaatacc
501 gacaacaatg aaatttatag taagaggaaa atccgtcgac tttagaaatc
551 gtgagggttc aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.59e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
576 |
557 |
2.59e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.