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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ860620.1 nt Saxifraga hirculus tRNA-Leu (trnL) ... 607 bp Saxifraga hirculus QL-PLN-00-007 607 bp View
DQ860623.1 nt Saxifraga oppositifolia tRNA-Leu (t... 598 bp Saxifraga oppositifolia QL-PLN-00-007 598 bp View
DQ860624.1 nt Saxifraga radiata tRNA-Leu (trnL) g... 607 bp Saxifraga radiata QL-PLN-00-007 607 bp View
DQ860625.1 nt Saxifraga setigera tRNA-Leu (trnL) ... 593 bp Saxifraga setigera QL-PLN-00-007 593 bp View
DQ860628.1 nt Smelowskia porsildii tRNA-Leu (trnL... 584 bp Smelowskia porsildii QL-PLN-00-007 584 bp View
DQ860634.1 nt Thalictrum alpinum tRNA-Leu (trnL) ... 601 bp Thalictrum alpinum QL-PLN-00-007 601 bp View
DQ860635.1 nt Tofieldia coccinea tRNA-Leu (trnL) ... 590 bp Tofieldia coccinea QL-PLN-00-007 590 bp View
DQ860636.1 nt Tofieldia pusilla tRNA-Leu (trnL) g... 595 bp Tofieldia pusilla QL-PLN-00-007 595 bp View
DQ860639.1 nt Vaccinium alaskaense tRNA-Leu (trnL... 569 bp Vaccinium ovalifolium QL-PLN-00-007 569 bp View
DQ860640.1 nt Vaccinium uliginosum tRNA-Leu (trnL... 568 bp Vaccinium uliginosum QL-PLN-00-007 568 bp View
DQ860641.1 nt Vaccinium vitis-idaea tRNA-Leu (trn... 572 bp Vaccinium vitis-idaea QL-PLN-00-007 572 bp View
DQ860642.1 nt Veratrum oxysepalum tRNA-Leu (trnL)... 601 bp Veratrum oxysepalum QL-PLN-00-007 601 bp View
DQ916868.1 nt Forsteronia leptocarpa voucher Simo... 1718 bp Forsteronia leptocarpa QL-PLN-00-007 567 bp View
DQ916869.1 nt Rhabdadenia biflora voucher Zona 61... 1705 bp Rhabdadenia biflora QL-PLN-00-007 567 bp View
DQ916870.1 nt Cryptolepis buchananii voucher Sult... 1681 bp Cryptolepis buchananii QL-PLN-00-007 566 bp View
DQ916871.1 nt Cryptolepis capensis voucher Abbott... 1684 bp Cryptolepis capensis QL-PLN-00-007 566 bp View
DQ916872.1 nt Cryptolepis oblongifolia voucher Br... 1695 bp Cryptolepis oblongifolia QL-PLN-00-007 566 bp View
DQ916873.1 nt Cryptostegia madagascariensis vouch... 1686 bp Cryptostegia madagascariensis QL-PLN-00-007 566 bp View
DQ916874.1 nt Ectadium latifolium voucher Albers ... 1680 bp Ectadium virgatum QL-PLN-00-007 560 bp View
DQ916875.1 nt Finlaysonia insularum voucher Middl... 1692 bp Finlaysonia insularum QL-PLN-00-007 566 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.