Match details
Record ID: |
DQ860628.1 |
Database: |
nt |
Go to original record |
Description: |
Smelowskia porsildii tRNA-Leu (trnL) gene, intron. |
Taxon: |
Smelowskia porsildii |
Original size: |
584 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
584 |
+ |
584 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgggttacg cgaacaaacc ggagtttaga
151 aagcgagaaa aaagggatag gtgcagagac tcgatggaag ctgttctaac
201 aaatggagtt cactaccttg tgttgataaa ggaattcttc gatcgaaact
251 tcaaatcaaa aaggatgaac gagaaaaacc tagattgtct aaatataggt
301 aacacaaaac gatctcaaaa atgacgacct gaatctcgat ttctattttt
351 ttctaaataa aatagaaatg ttgtgaatca attcgaagtt taagaaagaa
401 tcgaatattc gttgatcaaa tgatttactt catagtctga tagttccttg
451 gtggaactta ttaatcggac gagaataaag atagagtccc attctacatg
501 tcaatactga caacaatgaa atttatagta agatgaaaat ccgttgactt
551 ttcaaatcgt gagggttcaa gtccctctat cccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.63e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
584 |
565 |
2.63e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.