Match details
Record ID: |
DQ860640.1 |
Database: |
nt |
Go to original record |
Description: |
Vaccinium uliginosum tRNA-Leu (trnL) gene, intron. |
Taxon: |
Vaccinium uliginosum |
Original size: |
568 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
568 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aaaaaaaaaa
101 aggggcaatc ctgagccaaa tccttctttt tggcaaacaa ataaagattc
151 cgaaagaaat aagggatagg tgcagagact caatggaagc tattctaaca
201 aatggagttg actgcgttgg tagaaagaat aggaattctt tcatcgaaac
251 tttcgaaaag atgaaagata actctatata catacgcata ggtaatgatt
301 aataacaacc aaaatctgta tccctatttt tttatatgaa aaatagacaa
351 atttttgtga attgatttca cattgaataa agatttacat atttattgat
401 caaatcattt actccatcgt ctgctagttc ttttaaagaa ctgatgaatc
451 gcacgagaat aaagatagag tcccattcta catgtcaata ccgacaagaa
501 tgaaatttct tgtaagagga aaatccgtcg actttaaaaa tcgtgagggt
551 tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.