Match details
Record ID: |
DQ916869.1 |
Database: |
nt |
Go to original record |
Description: |
Rhabdadenia biflora voucher Zona 616 (FTG) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Rhabdadenia biflora |
Original size: |
1705 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
800 |
1366 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtaaggaa
51 acctactaag tgatgacttt caaattcaga gaaaccccgg aattaagaaa
101 aagggcaatc ctgagccaaa tcctattttc cataaacaaa ggttcagaaa
151 acgaaaacaa ggataggtgc agagactcga cggaagctgt tctaacaaat
201 ggagttaacc gcgttggtag aaaaatcttt ccatcgaaaa ttcagaaagg
251 atgaaggata tacatagata ttgaatacta tatcaaaatc aaatgattaa
301 tgccgacacg aatgaatctg tatttttgtt ctataaaaaa cggaagaatt
351 ggtgtgattt gattctttct tcaatgtgga atcgactatt cagtgatcaa
401 atgattcact ccatagtctg tagatcctct tttcaagaac ggattaatcg
451 gacgagaata aagatagagt cccgttctac atgtcaatgc tggcaacaat
501 gaaatttata gtaagaggaa aatccgtcga cttaaaaaat cgtgagggtt
551 caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.