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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ860555.1 nt Dryas octopetala tRNA-Leu (trnL) ge... 590 bp Dryas octopetala QL-PLN-00-007 590 bp View
DQ860556.1 nt Dupontia fisheri tRNA-Leu (trnL) ge... 613 bp Dupontia fisheri QL-PLN-00-007 613 bp View
DQ860561.1 nt Festuca brachyphylla tRNA-Leu (trnL... 610 bp Festuca brachyphylla QL-PLN-00-007 610 bp View
DQ860562.1 nt Festuca rubra tRNA-Leu (trnL) gene,... 610 bp Festuca rubra QL-PLN-00-007 610 bp View
DQ860563.1 nt Juncus arcticus tRNA-Leu (trnL) gen... 614 bp Juncus arcticus QL-PLN-00-007 614 bp View
DQ860568.1 nt Kalmia procumbens tRNA-Leu (trnL) g... 585 bp Kalmia procumbens QL-PLN-00-007 585 bp View
DQ860569.1 nt Oxyria digyna tRNA-Leu (trnL) gene,... 618 bp Oxyria digyna QL-PLN-00-007 618 bp View
DQ860570.1 nt Oxytropis borealis tRNA-Leu (trnL) ... 621 bp Oxytropis borealis QL-PLN-00-007 621 bp View
DQ860571.1 nt Oxytropis campestris tRNA-Leu (trnL... 605 bp Oxytropis campestris QL-PLN-00-007 605 bp View
DQ860572.1 nt Oxytropis maydelliana tRNA-Leu (trn... 619 bp Oxytropis maydelliana QL-PLN-00-007 619 bp View
DQ860574.1 nt Papaver macounii tRNA-Leu (trnL) ge... 596 bp Papaver macounii QL-PLN-00-007 596 bp View
DQ860577.1 nt Parrya nudicaulis tRNA-Leu (trnL) g... 585 bp Parrya nudicaulis QL-PLN-00-007 585 bp View
DQ860578.1 nt Pedicularis albolabiata tRNA-Leu (t... 557 bp Pedicularis albolabiata QL-PLN-00-007 557 bp View
DQ860579.1 nt Pedicularis langsdorffii tRNA-Leu (... 559 bp Pedicularis langsdorffii QL-PLN-00-007 559 bp View
DQ860580.1 nt Pedicularis oederi tRNA-Leu (trnL) ... 566 bp Pedicularis oederi QL-PLN-00-007 566 bp View
DQ860581.1 nt Pedicularis parviflora tRNA-Leu (tr... 557 bp Pedicularis parviflora QL-PLN-00-007 557 bp View
DQ860583.1 nt Poa alpina tRNA-Leu (trnL) gene, in... 562 bp Poa alpina QL-PLN-00-007 562 bp View
DQ860586.1 nt Polemonium acutiflorum tRNA-Leu (tr... 594 bp Polemonium acutiflorum QL-PLN-00-007 594 bp View
DQ860587.1 nt Polemonium boreale tRNA-Leu (trnL) ... 594 bp Polemonium boreale QL-PLN-00-007 594 bp View
DQ860589.1 nt Potentilla hyparctica tRNA-Leu (trn... 603 bp Potentilla hyparctica QL-PLN-00-007 603 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.