Match details
Record ID: |
DQ860583.1 |
Database: |
nt |
Go to original record |
Description: |
Poa alpina tRNA-Leu (trnL) gene, intron. |
Taxon: |
Poa alpina |
Original size: |
562 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
562 |
+ |
562 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaaag gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tcctttaata
251 aacacgtatc gatacttaca tagcaaacga ttaatcacag aacccatatt
301 ataatattgg ttctttattc ttttttagaa tgaaataaaa aattctgaat
351 ttttttcgaa ttattgtgaa tccattccaa tcgaatattt agtaatcaaa
401 tccttcaatt caaagttttg aggtctttaa aaaagtggat taatcggacg
451 aggacaaaga gagagtccca ttctacatgt caatactgac aacaatgaaa
501 tttctagtaa aaggaaaatc cgtcgacttt ataagtcgga gggttcaagt
551 ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
562 |
543 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.