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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MG836507.1 nt Amaranthus hybridus subsp. cruentus... 150757 bp Amaranthus cruentus QL-PLN-00-007 594 bp View
MG963225.1 nt Malouetia tamaquarina chloroplast, ... 127403 bp Malouetia tamaquarina QL-PLN-00-007 566 bp View
MG963226.1 nt Macropharynx renteriae chloroplast,... 130043 bp Macropharynx renteriae QL-PLN-00-007 567 bp View
MG963227.1 nt Pycnobotrya nitida chloroplast, par... 128810 bp Pycnobotrya nitida QL-PLN-00-007 563 bp View
MG963228.1 nt Vinca major chloroplast, partial ge... 127690 bp Vinca major QL-PLN-00-007 575 bp View
MG963230.1 nt Mesechites trifidus chloroplast, pa... 128408 bp Mesechites trifidus QL-PLN-00-007 541 bp View
MG963231.1 nt Plumeria cubensis chloroplast, part... 124103 bp Plumeria cubensis QL-PLN-00-007 564 bp View
MG963232.1 nt Allamanda schottii chloroplast, par... 128603 bp Allamanda schottii QL-PLN-00-007 587 bp View
MG963233.1 nt Leuconotis anceps chloroplast, part... 124585 bp Leuconotis anceps QL-PLN-00-007 571 bp View
MG963234.1 nt Ambelania acida chloroplast, partia... 125673 bp Ambelania acida QL-PLN-00-007 585 bp View
MG963235.1 nt Pachypodium baronii chloroplast, pa... 128851 bp Pachypodium baronii QL-PLN-00-007 577 bp View
MG963236.1 nt Macropharynx peltata chloroplast, p... 129880 bp Macropharynx peltata QL-PLN-00-007 567 bp View
MG963237.1 nt Prestonia portobellensis chloroplas... 130328 bp Prestonia portobellensis QL-PLN-00-007 567 bp View
MG963238.1 nt Alafia barteri chloroplast, partial... 129264 bp Alafia barteri QL-PLN-00-007 567 bp View
MG963239.1 nt Streptoechites chinensis chloroplas... 129366 bp Streptoechites chinensis QL-PLN-00-007 562 bp View
MG963240.1 nt Thevetia peruviana chloroplast, par... 128309 bp Thevetia peruviana QL-PLN-00-007 599 bp View
MG963241.1 nt Odontadenia perrottetii chloroplast... 129526 bp Odontadenia perrottetii QL-PLN-00-007 567 bp View
MG963242.1 nt Secondatia densiflora chloroplast, ... 129939 bp Secondatia densiflora QL-PLN-00-007 566 bp View
MG963243.1 nt Hunteria zeylanica chloroplast, par... 110978 bp Hunteria zeylanica QL-PLN-00-007 562 bp View
MG963244.1 nt Stipecoma peltigera chloroplast, pa... 128835 bp Stipecoma peltigera QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.