Match details
Record ID: |
MG963235.1 |
Database: |
nt |
Go to original record |
Description: |
Pachypodium baronii chloroplast, partial genome. |
Taxon: |
Pachypodium baronii |
Original size: |
128851 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48755 |
49331 |
+ |
577 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtaaggaa
51 acctactaag tgatgacttt caaattcaga gaaaccccgg aattaagaaa
101 aagggcaatc ctgagccaaa tcctattttc cacaaacaaa ggttcagaaa
151 acgaaaacaa ggataggtgc agagactcga cggaagctgt tctaacaaat
201 ggagttggct gcgttggtag agaaatcttt ccaccgaaaa ttcagaaagg
251 atgaaggata aacacatata catacgtatt gaatactata tcaatcaaat
301 gattaatgcc gacccgaacg aatctctatt ttttctataa aaaacggaag
351 aattggtgtg attcgattct ttcttcaatg tggaatcgaa tattcattga
401 ttaaatgatt cactccatag tctgtagatc ctcttttcaa gaacggatta
451 atcggacgag aatcgagaat aaagatagag tcccgttcta cgtgtcaatg
501 ctggcaacaa tgaaatttat agtaagagga aaatccgtcg acttaaaaat
551 cgtgagggtt caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.60e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
577 |
558 |
2.60e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.