Match details
Record ID: |
MG963236.1 |
Database: |
nt |
Go to original record |
Description: |
Macropharynx peltata chloroplast, partial genome. |
Taxon: |
Macropharynx peltata |
Original size: |
129880 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48519 |
49085 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtaaggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaagaaa
101 aagggcaatc ctgagccaaa tcctattttc cacaaacaaa ggttcagaaa
151 acgaaaacaa ggataggtgc agagactcga cggaagctgt tctaacaaat
201 ggagttgacc gcgttggtag agaaatcttt ccatcgaaaa ttcagaaagg
251 atgaaggata aacacatata catacgtatt gaatactata tcaaatgatt
301 aatgtcgacc cgaatgaatc tgtatttttt ctataaaaaa cggaagaatt
351 ggtgtgattc gattctttct tcaatgtgga atcgaatatt cattgatcaa
401 atgattcact ccatagtctg tagatcctct tttcaagaac ggattaatcg
451 gacgagaata aagatagagt cccgttctac atgtcaatgc tgacaacaat
501 gaaatttata gtaagaggaa aatccgtcga cttaaaaaat cgtgagggtt
551 caagtccctc tatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.