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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ430934.1 nt Myoporum montanum chloroplast tRNA-... 1309 bp Myoporum montanum QL-PLN-00-007 564 bp View
AJ430935.1 nt Selago thomsoni chloroplast tRNA-Le... 1267 bp Selago thomsonii QL-PLN-00-007 571 bp View
AJ430938.1 nt Polypremum procumbens chloroplast t... 1255 bp Polypremum procumbens QL-PLN-00-007 560 bp View
AJ430939.1 nt Tetrachondra patagonica chloroplast... 1151 bp Tetrachondra patagonica QL-PLN-00-007 550 bp View
AJ430940.1 nt Verbena rigida chloroplast tRNA-Leu... 1235 bp Verbena rigida QL-PLN-00-007 553 bp View
AJ430941.1 nt Byblis liniflora chloroplast tRNA-L... 1241 bp Byblis liniflora QL-PLN-00-007 562 bp View
AJ430945.1 nt Kaliphora madagascariensis chloropl... 1318 bp Kaliphora madagascariensis QL-PLN-00-007 562 bp View
AJ430946.1 nt Montinia caryophyllacea chloroplast... 1168 bp Montinia caryophyllacea QL-PLN-00-007 556 bp View
AJ430970.1 nt Campanula elatines chloroplast tRNA... 1352 bp Campanula elatines QL-PLN-00-007 586 bp View
AJ430973.1 nt Scaevola sp. Lundberg 55 chloroplas... 1219 bp Scaevola sp. Lundberg 55 QL-PLN-00-007 564 bp View
AJ430978.1 nt Stylidium bulbiferum chloroplast tR... 1337 bp Stylidium bulbiferum QL-PLN-00-007 583 bp View
AJ492269.1 nt Monophyllaea horsfieldii chloroplas... 970 bp Monophyllaea horsfieldii QL-PLN-00-007 569 bp View
AJ492290.1 nt Chirita longgangensis chloroplast t... 948 bp Primulina longgangensis QL-PLN-00-007 552 bp View
AJ492291.1 nt Chirita spadiciformis chloroplast t... 948 bp Primulina spadiciformis QL-PLN-00-007 552 bp View
AJ492292.1 nt Chiritopsis repanda chloroplast tRN... 945 bp Primulina repanda QL-PLN-00-007 550 bp View
AJ492293.1 nt Didymocarpus citrinus chloroplast t... 946 bp Didymocarpus citrinus QL-PLN-00-007 549 bp View
AJ492294.1 nt Didymocarpus cordatus chloroplast t... 947 bp Didymocarpus cordatus QL-PLN-00-007 549 bp View
AJ492296.1 nt Haberlea rhodopensis chloroplast tR... 959 bp Haberlea rhodopensis QL-PLN-00-007 550 bp View
AJ492299.1 nt Petrocosmea nervosa chloroplast tRN... 939 bp Petrocosmea nervosa QL-PLN-00-007 543 bp View
AJ492300.1 nt Primulina tabacum chloroplast tRNA-... 948 bp Primulina tabacum QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.